All talks will be held at FMF UL, Jadranska 21, 1000 Ljubljana, Lecture hall 202.
Monday, 12.2.2024
| Time | Speaker | Title |
| 9.15-9.20 | Introduction | |
| 9.20-10.00 | Sofia Lambropoulou | (Topological) bonded knots and bonded knotoids |
| 10.00-10.40 | Sašo Strle | On some 4D knot invariants |
| 10.40-11.00 | Coffe Break | |
| 11.00-11.30 | Maciek Sikora | Analysing the diversity of knotted proteins predicted by the AlphaFold Model |
| 11.30-12.00 | Paweł Rubach | AlphaKnot 2.0 – database and server to measure entanglement in AlphaFold-solved protein models |
| 12.00-12.15 | Marta Korpacz | Knotted proteins |
| 12.15-12.30 | Grzegorz Kaszuba | Generation of High Entropy Alloys with Molecular Dynamics and Variational Autoencoder |
| 12.30-13.20 | Lunch Break | |
| 13.20-17.00 | Excursion to Postojna cave |
Tuesday, 13.2.2024
| Time | Speaker | Title |
| 9.20-10.00 | Cristian Michelleti | Dynamics and mechanics of entangled nucleic acids: insights from molecular dynamics simulations |
| 10.00-10.40 | San Hadži | Towards the high-resolution structure(s) of coiled-coil protein origami |
| 10.40-11.00 | Coffe Break | |
| 11.00-11.30 | Petra Žigert Pleteršek | Breaking down the topological indices |
| 11.30-12.00 | Niko Tratnik | Computing the Generalized Zhang-Zhang Polynomial of Benzenoid Systems |
| 12.00-12.30 | Simon Brezovnik | General cut method and weighted Wiener indices – application to molecular graphs |
| 12.30-14.30 | Lunch Break | |
| 14.30-15.10 | Roman Jerala | Design of molecular origami for new polyhedra and knotted structures |
| 15.10-15.40 | Wanda Niemyska | RNA knots |
| 15.40-16.10 | Paolo Caviccchioli | Using persistent homology for the identification of lasso proteins (joint work with B. Gabrovšek) |
| 16.10-16.30 | Coffe Break | |
| 16.30-17.30 | Discussion on the application of AI in interdisciplinary research |
Wednesday, 14.2.2024
| Time | Speaker | Title |
| 9.20-10.00 | Alessia Cattabriga | Representing knots and links in lens spaces |
| 10.00-10.40 | Anže Božič | Scaling properties and topological indices of RNA |
| 10.40-11.00 | Coffe Break | |
| 11.00-11.30 | Petr Šimeček | Unveiling the Entangled Landscape of Artificial Knotted Proteins |
| 11.30-12.00 | Eva Klimentová | ML model for artifical knot |
| 12.00-12.20 | Mateusz Fortunka | Are double-knots real? Searching for experimental structures of double-knotted proteins |
| 12.30-13.30 | Lunch Break |